Iridovirus Comprehensive Database
Iridovirus Comprehensive Database (IVCDB) is a comprehensive database of Iridoviridae, including geographical location and genome of known virus isolates, non-redundant protein database of Iridoviridae, core genes of different viral taxonomic levels, evolutionary relationships between virus isolates, host range, vaccines, and visual detection methods.
Virus isolates
310
Asia: 102 / Europe: 95 / Africa: 3
North America: 85 / South America: 4
Oceania: 20 / Antarctica: 1
Complete genomes
307
Lymphocystivirus: 8 / Megalocytivirus: 68 / Ranavirus: 206
Chloriridovirus: 7 / Iridovirus: 7 / Decapodiridovirus: 9
Daphniairidovirus: 1 / Unclassified: 1
Non-redundant proteins
4,378
Reannotated ORFs/proteins: 47,051
Original ORFs/proteins: 29,208
Core genes: 162
Core genes
162
Iridoviridae: 29
Alphairidovirinae: 31 / Betairidovirinae: 52
Megalocytivirus: 44 / Ranavirus: 35
Genomic collinearity
35,569
Within genus: 23,417
Between genera: 12,152
Virus isolates: 310 / Genomic sequences: 346
Host species
115
Fish: 49 / Amphibian: 36
Reptiles: 13 / Invertebrate: 17
CR: 4 / EN: 3 / VU: 7 / NT: 5
Vaccines
122
Fish: 118 / Amphibian: 4
Inactivated: 43 / Attenuated: 5 / Live: 3
Subunit: 43 / pDNA: 25 / Viral vector: 3
Detection methods
42
LAMP: 18 / RPA: 11 / RAA: 2
CRISPR/Cas: 7 / CPA: 6 / GICA: 2
PCR: 1 / Aptamers: 1 / Coagglutination: 1
Virus distribution
Visualization of virus distribution
Evolutionary tree
Evolutionary tree by viral taxonomic level
Iridoviridae
Family
Based on 29 core genes
2 subfamilies / 7 genera / 27 species / 310 isolates
Alphairidovirinae
Subfamily
Based on 31 core genes
3 genera / 15 species / 283 isolates
Betairidovirinae
Subfamily
Based on 52 core genes
4 genera / 12 species / 25 isolates
Megalocytivirus
Genus
Based on 44 core genes
4 species / 3 genotypes / 69 isolates
Ranavirus
Genus
Based on 35 core genes
7 species / 9 genotypes / 206 isolates
Host range
Host range by viral taxonomic level
Host range by degree of endangerment for species
Host range by species classification
Vaccine
Vaccine by type
Vaccine by viral taxonomic level
Visual detection method
Detection method by type
Detection method by viral taxonomic level
Detection method by host classification